Cytosim  PI
Cytoskeleton Simulator
FieldProp Class Reference
Inheritance diagram for FieldProp:
Property

Public Member Functions

 FieldProp (const std::string &n)
 constructor
 
 ~FieldProp ()
 destructor
 
std::string kind () const
 identifies the property
 
void clear ()
 set default values
 
void read (Glossary &)
 set from a Glossary
 
void complete (SimulProp const *, PropertyList *)
 derive parameters
 
Propertyclone () const
 return a carbon copy of object
 
void write_data (std::ostream &) const
 write all values
 
- Public Member Functions inherited from Property
 Property (const std::string &n, const int index=-1)
 constructor must provide a name
 
virtual ~Property ()
 destructor
 
std::string name () const
 return identifier for instantiation
 
void name (const std::string &n)
 change name
 
bool is_named (const std::string &n)
 true if 'name' matches
 
int index () const
 index, unique among all Property of similar kind()
 
void index (int x)
 set index in the array of Properties
 
bool modified () const
 true if at least one value is different than its default setting
 
void readString (std::string &, char stamp)
 set from a string, return number of values assigned More...
 
void readFile (const char file[])
 set from a string, return number of values assigned
 
void write_diff (std::ostream &, const Property *ref) const
 write only values that differ from the ones specified in ref
 
void write_diff (std::ostream &, bool prune) const
 if ( prune == true ), write values that differ from the default values
 
void write (std::ostream &, bool prune=false) const
 write header + data More...
 

Public Attributes

real step
 size of square unit cell
 
real diffusion
 diffusion constant
 
real decay_rate
 decay rate per unit time
 
int positive
 if > 0, the simulation is stopped in any cell becomes negative More...
 
bool save
 if false, the field is not recorded in the trajectory file
 
real diffusion_theta
 
real decay_rate_dt
 
Space const * confine_space_ptr
 

Friends

class FieldSet
 

Additional Inherited Members

- Static Public Member Functions inherited from Property
template<typename C >
static void write_param (std::ostream &os, std::string const &name, C const &c)
 formatted output of one parameter
 
template<typename C >
static void write_param (std::ostream &os, std::string const &name, C const *c, int cnt)
 formatted output of one parameter
 
template<typename C , typename D >
static void write_param (std::ostream &os, std::string const &name, C const &c, D const &d)
 formatted output of one parameter
 
template<typename C , typename D , typename E >
static void write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e)
 formatted output of one parameter
 
template<typename C , typename D , typename E , typename F >
static void write_param (std::ostream &os, std::string const &name, C const &c, D const &d, E const &e, F const &f)
 formatted output of one parameter